MES believes that school education is of paramount importance and great care is taken in starting new schools in almost all the districts of Kerala. MES runs more than 50 different types of large and medium schools including Residential Schools, Day Schools, English Medium Schools, Nursery Schools, Malayalam Schools, Training Schools etc., Many quality improvement programs are undertaken and to achieve this a number of CBSE schools have been started.
Following the Pre Degree de-linking process of State Government , MES was sanctioned 3 Plus two schools at PONNANI, MAMPAD and MANNARGHAT respectively. It is to the credit of the organization that each school is designed and constructed at a cost of Rs. 1 to 2 crores each and was completed and start functioning in a record. Three more schools at Vandasnmedu, Valanchery and Kodungalur are awaiting final Govt. orders with MES having purchased land for these.

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Aided Higher Secondary Schools (State Syllabus)

MES Higher Secondary School, Irumbiliyam, Malappuram
MES Higher Secondary School, Ponnani, Malappuram
MES Higher Secondary School, Mampad Malappuram
MES Higher Secondary School, Mannarkad, Palakkad
MES Higher Secondary School, Sreenarayanapuram, Thrissur
MES Higher Secondary School, Vandanmedu, Idukki

Unaided State Syllabus Higher Secondary/High Schools

MES English Medium Higher Secondary School, Panmana, Kollam
MES English Medium Higher Secondary School, Olavakkod, Palakkad
K.N.M. MES High School, Edathala, Aluva
MES K.T.M. English Medium H.S.S, Vattamanapuram, Palakkad
MES English Medium High School, Mundur, Palakkad
Maulana Azad Secondary School, Channankara, Thiruvananthapuram

Tamilnadu State Syllabus School

MES Razeena Matriculation Hr. Sec. School, Chennai

CBSE Schools

MES Raja Residential School & Jr. College, Chathamangalam, Calicut
MES Central School, Thazhepalam, Tirur
MES Central School, Tanur, Malappuram
MES Central School, Puthanathani, Malappuram Dist.
Dr. N. K. Mohammed Memorial MES Central School, Valancherry, Malappuram
MES College of Engineering Campus Sr. Sec. School, Thrikanapuram,   Kuttippuram
MES Medical College Campus Central School, Pelakkad, Perinthalmanna
MES Bava Residential School, Thalassery
MES English Medium Senior Secondary School, Pattambi, Palakkad
MES Raja Residential School, Pavangad, Calicut
MES Central School, Kaithapoyil, Kozhikode
MES Public School, P. Vemballur, Kodungallur
MES English Medium School, Thirunavaya, Malappuram Dist.
MES English Medium School, Alapuzha
MES English Medium School, Elippakulam, Alapuzha
MES Indian School, Doha, Qatar
MES Central School, Kunnukara, Aluva
MES Public School, Panoor, Kannur Dist.
Dr. Ghafoor Memorial MES Public School, Mundakayam, Kottayam
MES Public School, Orkkatteri, Kozhikode Dist.
MES A. A. Rahim Memorial Central School, Atholi, Kozhikode
MES Central School, Cheekkunnummal, Kallachi
MES Central School, Koyilandy, Kozhikode
MES Central School, Vaniyambalam, Malappuram Dist.
MES Central School Mangalam, Tirur, Malappuram
MES English Medium School, Kalpakancherry.
MES Public School, Kathirur
MES Public School, Puliyanambram, Kariyad.
MES English Medium School, Kovoor.
MES Residential School, Thankalam, Kothamangalam
MES central School, Kunnathunad, Perumbavoor
MES English Medium School, Kunnumpuram, Malappuram
MES English Medium School, Chengotukave, Koyilandy
Palangad MES School, Koduvally, Kozhikode
MES English School, Chandakunnu, Nilambur
MES English Medium School, Ayilakkad, Malappuram

ICSE Schools

MES Udyogamandal School, Udyogamandal.

Special Schools

  MES Institute of Mentally Handicapped [MIMH], Elippakulam, Alapuzha
  K.N.M. MES Mentally Retarded & Handicapped Special School, Edathala, Aluva

Other Schools

MES English Medium School, Umayanalloor, Kollam
MES English School, West Kollam, Kollam.
MES English Medium U.P. School, Kannanalloor, Kollam
MES English Medium School, Kunnicode, Kollam
MES English School, Kandachira, Kollam
MES English School, Elampalloor, Kundara
MES A.M.A.M. English Medium School, Mampad, Malappuram.
M.A. Moopan Memorial MES HI-Tech School, Kalpakanchery, Malappuram.
MES IIT, Kuttippuram
MES Nursery & LP School, Ponnani Nagaram
MES Nursery School, Pulpatta, Palakkad
MES English Medium School, Kalluvayal, Sulthan Bathery
K.N.M. MES Nursery School, Edathala, Aluva
K.N.M. MES U.P. School, Edathala, Aluva
MES K.S.H.M. Aided L.P. School, Edathanattukara, Vattamannapuram
MES Aided L.P. School, Mundoor
MES English Medium U.P. School, Mannarkkad
MES Eastern Aided U.P. School, Eloor, Udyogmandal
MES Aided U.P. School, Edathala
MES School, Mullikkala, Thevalakkara
MES English Medium School, Oachira