A number of colleges are run by MES in various districts of Kerala and they include 7 Aided Post Graduate Colleges, 6 self-financing colleges affiliated to the University of Calicut / MG University. Eight University affiliated 1st grade colleges offering Graduate and Post-graduate courses, 10 Women's Parallel Colleges, Arabic Colleges. In addition to giving a great emphasis for promotion of higher education, a number of ‘Need-Based’ career oriented courses are taught in these colleges in addition to conventional courses.

Listed below various colleges run by MES.

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Professional Institutions

1	MES Medial College, Perinthalmanna
2	MES College of Engineering, Kuttippuram
3	MES Dental College, Perinthalmanna
4	MES College of Nursing
5	MES School of Nursing, Perinthalmanna

(The institution is located in a separate building with an area of 3,000 sq. mtrs. in the MESAMS campus with all necessary facilities. The institution is approved by the Indian Nursing Council, Government of Kerala, Nurses’ & Midwifery Council and University of Calicut. MES School of Nursing offers offers General Nursing & Midwifery (GNM) course of three and a half years duration. The annual intake is 20 students.)

Training Colleges

1	MES Kappungal Haji Memorial B.Ed Training College, Edathanattukara
2	MES B.Ed College, Edathala, Aluva.

Arts & Science Colleges

1	Dr. Ghafoor Memorial MES Mampad College, Mampad, Malappuram
2	MES Ponnani College, Ponnani, Malappuram
3	MES Keveeyam College, Valancherry, Malappuram
4	MES Kalladi College, Mannarkad, Palakkad
5	MES Asmabi College, P. Vemballur, Kodungallur
6	MES College Marampally, Aluva, Ernakulam
7	MES College Nedumkandam, Idukki Dist.
8	MES College Vatakara, Villiapally, Vatakara
9	MES College Kunnukara, Aluva
10	MES College, Propose: P.O, Erumeli, Kottayam
11	MES College of Advanced Studies, Edathala
12	MES Arts & Science College, Chathamangalam
13	MES College, Kuthuparamba.